I try to use sleuth package but I have this error:

 more logs/sleuth_run.log
There were 24 warnings (use warnings() to see them)
reading in kallisto results
dropping unused factor levels
......
normalizing est_counts
Error: Duplicate identifiers for rows (4, 5), (10, 11), (16, 17), (22, 23), (28, 29), (
34, 35), (40, 41), (46, 47), (52, 53), (58, 59), (64, 65), (70, 71), (76, 77), (82, 83)
, (88, 89), (94, 95), (100, 101), (106, 107), (112, 113), (118, 119), (124, 125), (130,
 131), (136, 137), (142, 143), (148, 149), (154, 155), (160, 161), (166, 167), (172, 17
3), (178, 179), (184, 185), (190, 191), (196, 197), (202, 203), (208, 209), (214, 215),
 (220, 221), (226, 227), (232, 233), (238, 239), (244, 245), (250, 251), (256, 257), (2
62, 263), (268, 269), (274, 275), (280, 281), (286, 287), (292, 293), (298, 299), (304,
 305), (310, 311), (316, 317), (322, 323), (328, 329), (334, 335), (340, 341), (346, 34
7), (352, 353), (358, 359), (364, 365), (370, 371), (376, 377), (382, 383), (388, 389),
 (394, 395), (400, 401), (406, 407), (412, 413), (418, 419), (424, 425), (430, 431), (4
36, 437), (442, 443), (448, 449), (454, 455), (460, 461), (466, 467), (472, 473), (478,
 479), (484, 485), (490, 491), (496, 497),
Execution halted
(TEST_ripper) [centos@pol-produ TEST_ripper]$ source activate /home/centos/data/TEST_ripper/.snakemake/conda/0a50c5fe
(/home/centos/data/TEST_ripper/.snakemake/conda/0a50c5fe) [centos@pol-produ TEST_ripper]$ R

R version 3.3.2 (2016-10-31) -- "Sincere Pumpkin Patch"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)


> library("sleuth")
Loading required package: ggplot2
Loading required package: dplyr

Attaching package: ‘dplyr’

The following objects are masked from ‘package:stats’:

    filter, lag

The following objects are masked from ‘package:base’:

    intersect, setdiff, setequal, union

> sessionInfo()
R version 3.3.2 (2016-10-31)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: CentOS Linux 7 (Core)

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
 [3] LC_TIME=it_IT.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=it_IT.UTF-8    LC_MESSAGES=en_US.UTF-8   
 [7] LC_PAPER=it_IT.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C            
[11] LC_MEASUREMENT=it_IT.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] sleuth_0.29.0 dplyr_0.5.0   ggplot2_2.2.1

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.13      assertthat_0.1    grid_3.3.2        plyr_1.8.4       
 [5] R6_2.2.0          gtable_0.2.0      DBI_0.6-1         magrittr_1.5     
 [9] scales_0.4.1      lazyeval_0.2.0    data.table_1.10.4 tools_3.3.2      
[13] munsell_0.4.3     colorspace_1.3-2  tibble_1.2