Error in .Primitive("c")(<S4 object of class "IRanges">) : could not find symbol "recursive" in environment of the generic function running msa
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@mtorresp1975-14813
Last seen 4.0 years ago

Hi all,

I would be grateful for help on the following issue.

When running the function msa from package I get the following error:

"Error in .Primitive("c")(<S4 object of class "IRanges">) :    could not find symbol "recursive" in environment of the generic function"

I have just upgraded R to version 3.4.3. I have also reinstalled some Bioconductor packages (BiocGenerics", "XVector", "S4Vectors", "IRanges", "GenomicRanges") and msa, but It doesn't work

Thanks!

 

sessionInfo()

R version 3.4.3 (2017-11-30)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.3 LTS

Matrix products: default
BLAS: /usr/lib/libblas/libblas.so.3.6.0
LAPACK: /usr/lib/lapack/liblapack.so.3.6.0

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C               LC_TIME=es_ES.UTF-8        LC_COLLATE=en_US.UTF-8    
 [5] LC_MONETARY=es_ES.UTF-8    LC_MESSAGES=en_US.UTF-8    LC_PAPER=es_ES.UTF-8       LC_NAME=C                 
 [9] LC_ADDRESS=C               LC_TELEPHONE=C             LC_MEASUREMENT=es_ES.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats4    parallel  stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.20.3 msa_1.2.1            Biostrings_2.38.4    XVector_0.10.0       IRanges_2.4.8        S4Vectors_0.8.11    
[7] BiocGenerics_0.16.1

loaded via a namespace (and not attached):
[1] zlibbioc_1.16.0 compiler_3.4.3  tools_3.4.3     Rcpp_0.12.14  

 

msa iranges • 751 views
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UBodenhofer ▴ 290
@ubodenhofer-5425
Last seen 12 weeks ago
University of Applied Sciences Upper Au…

It seems that it is an installation issue with one of the packages 'msa' depends on. See the following related thread: Error in GRanges: could not find symbol "recursive" in environment of the generic function

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