what is wrong with biomart
1
1
Entering edit mode
@bioinformatics-10931
Last seen 2.2 years ago
United States

Hello,

I am getting the following error 

Error: package or namespace load failed for ‘biomaRt’ in get0(".packageName", env, inherits = FALSE):
 lazy-load database '/Library/Frameworks/R.framework/Versions/3.4/Resources/library/biomaRt/R/biomaRt.rdb' is corrupt
In addition: Warning message:
In get0(".packageName", env, inherits = FALSE) :
  internal error -3 in R_decompress1​

 

biomart • 907 views
ADD COMMENT
0
Entering edit mode
@soulsacross-15504
Last seen 6.0 years ago

I faced the same issue, turns out removing the package and installing the last devel version seemed to solve the problem. Try

 

remove.packages(biomaRt)
biocLite("devtools")
BiocInstaller::biocLite('grimbough/biomaRt')

library(devtools)
library(biomaRt)

 

It should work.

Regards

 

ADD COMMENT

Login before adding your answer.

Traffic: 940 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6