Error in cgdsr for getting clinical data
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@yusuke-kuwahara-14879
Last seen 2.5 years ago
Japan/Tokyo

Hi all,.

 

I am trying to get clinical data from cbioportal using cgdsr.

I get a error when I  do the following command to get clinical data of TCGA bladder study, however it works well for lung study.  

myclinicaldata <- getClinicalData(mycgds, "blca_tcga_all")
Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec,  : 
  line 284 did not have 91 elements

myclinicaldata <- getClinicalData(mycgds, "lusc_tcga_all")
dim(myclinicaldata)
[1] 504  77

Any help would be greatly appreciated.

Yusuke

 

cgdsr • 457 views
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