Question: How to draw venn diagram with four CSV files
0
gravatar for kwangseob
22 months ago by
kwangseob0
kwangseob0 wrote:

I have four csv files with the first row with gene name

and the second row with rsIDs.

ex)

        GENE          rsID
1         AGER     rs2070600
2        CD226      rs763361
3          CFB      rs541862
4      COL11A2 Affx-52341735
5      COL11A2     rs2076310
6      COL11A2     rs2254287
7      COL11A2     rs2257126
8      COL11A2     rs2294479
9      COL11A2     rs2855425
10     COL11A2     rs2855425
11     COL11A2     rs2855437
12     COL11A2     rs2855442
13     COL11A2     rs2855448
14     COL11A2     rs2855459
15     COL11A2     rs3116994
16     COL11A2     rs3116999
17     COL11A2     rs3129207

> aav<-read.csv("AAV.csv")
> gpa<-read.csv("GPA.csv")
> pr3<-read.csv("PR3.csv")
> mpo<-read.csv("MPO.csv")

I attached 4 files to the variables. and I want to make the venn diagram with existing rsIDs.

How should I start?? I am so new to this R....

snp R venn diagram • 432 views
ADD COMMENTlink modified 22 months ago by James W. MacDonald52k • written 22 months ago by kwangseob0
Answer: How to draw venn diagram with four CSV files
0
gravatar for James W. MacDonald
22 months ago by
United States
James W. MacDonald52k wrote:

I don't know of any software on Bioconductor that is specific for drawing Venn diagrams, so this is probably not the place to ask. But do note that a Google search for 'venn R' turned up several choices, most of which are likely to have a vignette that explains how to use them.

ADD COMMENTlink written 22 months ago by James W. MacDonald52k
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