How to draw venn diagram with four CSV files
1
0
Entering edit mode
kwangseob • 0
@kwangseob-14934
Last seen 6.2 years ago

I have four csv files with the first row with gene name

and the second row with rsIDs.

ex)

        GENE          rsID
1         AGER     rs2070600
2        CD226      rs763361
3          CFB      rs541862
4      COL11A2 Affx-52341735
5      COL11A2     rs2076310
6      COL11A2     rs2254287
7      COL11A2     rs2257126
8      COL11A2     rs2294479
9      COL11A2     rs2855425
10     COL11A2     rs2855425
11     COL11A2     rs2855437
12     COL11A2     rs2855442
13     COL11A2     rs2855448
14     COL11A2     rs2855459
15     COL11A2     rs3116994
16     COL11A2     rs3116999
17     COL11A2     rs3129207

> aav<-read.csv("AAV.csv")
> gpa<-read.csv("GPA.csv")
> pr3<-read.csv("PR3.csv")
> mpo<-read.csv("MPO.csv")

I attached 4 files to the variables. and I want to make the venn diagram with existing rsIDs.

How should I start?? I am so new to this R....

R SNP venn diagram • 1.3k views
ADD COMMENT
0
Entering edit mode
@james-w-macdonald-5106
Last seen 5 hours ago
United States

I don't know of any software on Bioconductor that is specific for drawing Venn diagrams, so this is probably not the place to ask. But do note that a Google search for 'venn R' turned up several choices, most of which are likely to have a vignette that explains how to use them.

ADD COMMENT

Login before adding your answer.

Traffic: 613 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6