How do you re-order .fcs files in a flowSet?
2
0
Entering edit mode
@samuel-ahuno-14031
Last seen 3.1 years ago
Ghana/KNUST

Hi,

I have a series of single-stained compensation controls (fcs files) loaded into  flowSet object which I would want to re-order to be used for calculating my spillover.

 

Best

Sam

 

flowcore flowset bioconductor flow cytometry fcs file • 515 views
ADD COMMENT
1
Entering edit mode
jaro.slamecka ▴ 130
@jaroslamecka-7419
Last seen 6 months ago
Mitchell Cancer Institute, Mobile AL, U…

This can be done by subsetting the flowSet with the re-ordered sample indices, e.g.:

set2 = set1[c(5,7,1:3,4,8)]

then check the order of the samples

sampleNames(set2)
ADD COMMENT
0
Entering edit mode
@samuel-ahuno-14031
Last seen 3.1 years ago
Ghana/KNUST

...Oh I missed that!

Thanks, Jaro!

 

Best, Sam

ADD COMMENT

Login before adding your answer.

Traffic: 202 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6