Question: topGO error : could not find function "annotationFun"
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12 months ago by
User0
User0 wrote:

Hi,

>Where am I going wrong?! I am trying to create topGO object by custom annotations, But am facing difficulty again and again. 

> GOdata <- new("topGOdata", ontology = "BP", allGenes = P_values, geneSelectionFun = topDiffGenes, description = "Simple session", annot = annFUN.gene2GO(whichOnto = "BP", feasibleGenes = NULL, gene2GO), gene2GO = gene2GO)

Building most specific GOs .....
Error in annotationFun(ontology, .Object@allGenes, ...) : 
  could not find function "annotationFun"

 

>If anyone could give some useful solution on urgent basis, would be highly appreciated. 

Thank you.

 

 

topgo R • 336 views
ADD COMMENTlink written 12 months ago by User0

Could you post your session info? Did you look at the manual page from page 8 and on?

ADD REPLYlink written 12 months ago by Lluís Revilla Sancho460
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