tximport failing at importing TPM instead of FPKM
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@fresardlaure-12591
Last seen 3.6 years ago

Hi,

I am willing to import TPM from RSEM output files. I noticed that I still obtain the FPKM values even if I am using the argument abundanceCol="TPM"

my command line is currently rsem = tximport(<list_of_genes.results_files>, type='rsem', txIn = FALSE, abundanceCol="TPM")

Thanks a lot in advance for your help,

All the best,

Laure

 

tximport rnaseq rsem • 441 views
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@mikelove
Last seen 7 hours ago
United States

Thanks. This is already fixed in the devel branch and will show up in the release in April. Note that you can always set the columns manually by setting type=“none”.

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