The Bioconductor Team is continuing to identify packages that will be deprecated in the next release to allow for the Bioconductor community to respond accordingly. The list will be updated monthly.
The current list of deprecated packages is as follows:
Maintainer requested deprecation:
Software Package: ontoCAT spliceR (functionalities moved to IsoformSwitchAnalyzeR) mvGST Experiment Data Package: RnaSeqTutorial cheung2010 MEALData (replaced with brgedata)
Software: GMRP MBttest OperaMate ToPASeq DASC RamiGO htSeqTools PAnnBuilder DMRScan XBSeq
ToPASeq has transitioned to a new maintainer so we expect this to come out of deprecation before the release.
We did not announce that the following is also no longer available
Experiment Data Package: IlluminaHumanMethylation450k.db