Hi Gregor, use, e.g., the function list.siggenes, i.e. > list.siggenes(sam9,0.9) to obtain the gene names. You can also use something like > summary(sam9,0.9) There you also get the gene names and additionally some statistics. This is, however, also explained in the vignette of siggenes. You can open this vignette by > vignette("siggenes") or if you use siggenes_1.4.0 (that's the BioC 1.7 version) under Windows, click on Vignettes --> siggenes --> siggenes Best, Holger > --- Urspr?ngliche Nachricht --- > Von: "M a r c e l" <benco81 at="" hotmail.com=""> > An: bioconductor at stat.math.ethz.ch > Betreff: [BioC] called genes after SAM anaylsis > Datum: Wed, 02 Nov 2005 16:33:11 +0100 > > Hi there! > > My aim was to get about 100 called genes out of the sam analysis which I > have achieved doing this: > > >sam9 <- sam(filtered, cl, delta=0.9, rand=2) > > the delta of 0.9. gives me 120 Called genes: > > >sam9 > SAM Analysis for the Two-Class Unpaired Case Assuming Unequal Variances > > Delta p0 False Called FDR > 0.900 0.570 8.920 120.000 0.042 > > and I now want to get all the Called genes to perform further anaylsis > (heatmap and so on). how can I do that? > > I?ve tried several things like: > > called <- sam9$Called > > but with no success. > > Thanks to everyone! > > cheers, > gregor > > _______________________________________________ > Bioconductor mailing list > Bioconductor at stat.math.ethz.ch > https://stat.ethz.ch/mailman/listinfo/bioconductor > -- Telefonieren Sie schon oder sparen Sie noch?