processing deseq2 result
1
0
Entering edit mode
me37uday • 0
@me37uday-15299
Last seen 6.0 years ago

I input a count matrix which does not contain any gene id information in it to deseq. I obtained the result table.

1. Now, how can i obtain the row numbers corresponding to a particular p value, as the row numbers corresponds to gene id in the original data set. Please help. 

2. How can i verify that the subset of genes selected by deseq2 is the best subset?

deseq2 • 529 views
ADD COMMENT
0
Entering edit mode

Hello me37uday!

It appears that your post has been cross-posted to another site: See https://www.biostars.org/p/304718/.

This is typically not recommended as it runs the risk of annoying people in both communities.

ADD REPLY
0
Entering edit mode
@mikelove
Last seen 8 hours ago
United States

Answered here: https://www.biostars.org/p/304718/

ADD COMMENT

Login before adding your answer.

Traffic: 489 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6