I'm having a little trouble with a couple installations at the moment. I've tried to install ATACseqQC on R3.4.4 and R3.4.3 using biocLite:
This seems to download all the files fine, but when I try to load the package using library("ATACseqQC") I get an error message
Error: package or namespace load failed for ‘ATACseqQC’ in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]): there is no package called ‘GO.db’
I then tried to install GO.db seperately using biocLite("GO.db") which fails to download outputting a number of error messages. I've pasted the output below can anyone help?
BioC_mirror: https://bioconductor.org Using Bioconductor 3.6 (BiocInstaller 1.28.0), R 3.4.4 (2018-03-15). Installing package(s) ‘GO.db’ installing the source package ‘GO.db’trying URL 'https://bioconductor.org/packages/3.6/data/annotation/src/contrib/GO.db_3.5.0.tar.gz' Content type 'application/x-gzip' length 31663705 bytes (30.2 MB) downloaded 30.2 MB '\\icnas4.cc.ic.ac.uk\np1216' CMD.EXE was started with the above path as the current directory. UNC paths are not supported. Defaulting to Windows directory. * installing *source* package 'GO.db' ... ** R ** inst ** preparing package for lazy loading ** help *** installing help indices converting help for package 'GO.db' finding HTML links ... done GOBASE html GOBPANCESTOR html GOBPCHILDREN html GOBPOFFSPRING html GOBPPARENTS html GOCCANCESTOR html GOCCCHILDREN html GOCCOFFSPRING html GOCCPARENTS html GOMAPCOUNTS html GOMFANCESTOR html GOMFCHILDREN html GOMFOFFSPRING html GOMFPARENTS html GOOBSOLETE html GOSYNONYM html GOTERM html GO_dbconn html ** building package indices ** testing if installed package can be loaded *** arch - i386 Error: package or namespace load failed for 'GO.db': .onLoad failed in loadNamespace() for 'GO.db', details: call: dbFileConnect(dbfile) error: DB file '' not found Error: loading failed Execution halted *** arch - x64 Error: package or namespace load failed for 'GO.db': .onLoad failed in loadNamespace() for 'GO.db', details: call: dbFileConnect(dbfile) error: DB file '' not found Error: loading failed Execution halted ERROR: loading failed for 'i386', 'x64' * removing '\\icnas4.cc.ic.ac.uk/np1216/R/win-library/3.4/GO.db' In R CMD INSTALL The downloaded source packages are in ‘C:\Users\NP1216\AppData\Local\Temp\RtmpOMgF5w\downloaded_packages’ Old packages: 'GenomicRanges' Update all/some/none? [a/s/n]: n Warning messages: 1: running command '"C:/PROGRA~1/R/R-34~1.4/bin/x64/R" CMD INSTALL -l "\\icnas4.cc.ic.ac.uk\np1216\R\win-library\3.4" C:\Users\NP1216\AppData\Local\Temp\RtmpOMgF5w/downloaded_packages/GO.db_3.5.0.tar.gz' had status 1 2: In install.packages(pkgs = doing, lib = lib, ...) : installation of package ‘GO.db’ had non-zero exit status