Question: How to extract overlapping and unique peaks from the Venn Diagram to a csv format in DiffBind?
gravatar for Hesh
10 days ago by
University of Washington
Hesh0 wrote:


I have differential binding analysis performed on a set of samples and plotted a Venn diagram (using DiffBind) to look at overlapping and unique diff. bound sites. Now I want to get those peaks in the Venn Diagram as a list for further analysis and to look on IGV. How can I convert these data to a report / csv file ? "bReturnPeaksets" function is removed it seems.


Thank you


ADD COMMENTlink modified 7 days ago by Rory Stark2.4k • written 10 days ago by Hesh0
gravatar for Rory Stark
7 days ago by
Rory Stark2.4k
CRUK, Cambridge, UK
Rory Stark2.4k wrote:

dba.plotVenn() returns the overlapping peaksets "invisibly", so bReturnPeaksets is no longer needed. Simple assign the return value of dba.plotVenn() to a variable and you will have a list of all the overlapping peaksets (as GRanges), as before.


ADD COMMENTlink written 7 days ago by Rory Stark2.4k

Thank you! 

ADD REPLYlink written 3 days ago by Hesh0
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