Question: Error with the tutorial for the WGCNA package
1
gravatar for yepingsun80
11 months ago by
yepingsun8010
yepingsun8010 wrote:

Dear all, 

I am trying the tutorial of WGCNA in R-3.4.4. Everything seemed OK untill I try this command:

     GOenr = GOenrichmentAnalysis(moduleColors, allLLIDs, organism = "mouse", nBestP = 10)

It gives the following error:

     Error in get(name, envir = asNamespace(pkg), inherits = FALSE) : Object 'Ontology' not found

Did you experience the same probem and could you tell me how to solve it?

Thanks in advance.

Arthur Sun 

 

wgcna • 317 views
ADD COMMENTlink modified 11 months ago by Peter Langfelder1.8k • written 11 months ago by yepingsun8010
Answer: Error with the tutorial for the WGCNA package
0
gravatar for Peter Langfelder
11 months ago by
United States
Peter Langfelder1.8k wrote:

Thanks for the bug report, I will fix this in the next WGCNA update. In the meantime, I suggest you take a look at the anRichment package (https://labs.genetics.ucla.edu/horvath/htdocs/CoexpressionNetwork/GeneAnnotation/) which provides a replacement for GOenrichmentAnalysis. Please look through the tutorial before attempting the analysis as the logic and the function names are somewhat different.

Peter

ADD COMMENTlink written 11 months ago by Peter Langfelder1.8k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 131 users visited in the last hour