I am new to do differential gene expression analysis uisng DESeq2. I have a set of 380 genes sequenced and i ran DESeq2 to find genes significantly expressed. However i read that DESeq2 is more suitable for whole genome expression analysis.
Is it OK to use DESeq2 for targeted gene expression analysis like i did only with around 380 genes.
Small number of genes is affecting in anyway the procedure of diffrential expression analysis method??
Kindly write down your experiences and share your ideas.
Thank you so much,