Question: BAM file into R from Illumina
0
gravatar for soheilazareie
19 months ago by
Canada, Vancouver, University of British Columbia
soheilazareie0 wrote:

I have 49 bam files aligned by STAR through Illumina and just wondering if there is any way to export BAM files from illumina without downloading, for example into R, if someone helps me to understand how to load my files into a single read table through summarizeOverlaps I would really appreciate.

Thanks,

illumina star bam file • 301 views
ADD COMMENTlink modified 19 months ago by ta_awwad10 • written 19 months ago by soheilazareie0

thanks, but how it will detect the URL (I mean the exact path), in this code?

ADD REPLYlink written 19 months ago by soheilazareie0
Answer: BAM file into R from Illumina
0
gravatar for ta_awwad
19 months ago by
ta_awwad10
Frankfurt am Main
ta_awwad10 wrote:
myBam <-c ("trt_1.bam", "trt_2.bam",  "wt_1.bam","wt_2.bam")

bamLst <- BamFileList (myBam, yieldSize=2000000)

summarizeOverlaps(bamLst,......)

 

good luck

 

 

 

 

 

 

 

 

ADD COMMENTlink written 19 months ago by ta_awwad10
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