Question: monocle estimateSizeFactors give Inf for all values
0
gravatar for jonessara770
15 months ago by
jonessara77010
jonessara77010 wrote:

Hi

I am newbie in monocle. When I am running estimateSizeFactors(ohla), all values are ohla$Size_Factor
   [1] Inf Inf Inf Inf Inf Inf

 

why?

 

ohla
CellDataSet (storageMode: environment)
assayData: 21011 features, 2394 samples
  element names: exprs
protocolData: none
phenoData
  sampleNames: GW08_PFC1_sc1 GW08_PFC1_sc2 ... GW23_PFC2_SF2_F25_sc50 (2394 total)
  varLabels: SampleName Weeks ... Size_Factor (5 total)
  varMetadata: labelDescription
featureData
  featureNames: A1BG A1BG-AS1 ... ZZZ3 (21011 total)
  fvarLabels: gene_short_name
  fvarMetadata: labelDescription
experimentData: use 'experimentData(object)'
Annotation:

rnaseq • 159 views
ADD COMMENTlink written 15 months ago by jonessara77010
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