Question: Reactome under R-3.4.3 install error
0
gravatar for xinfu.xia
17 months ago by
xinfu.xia0
xinfu.xia0 wrote:

Why I get the following error ?  I can successfully install other packages like BiocGenerics and BiocParallel etc.

Thanks

> install.packages("Reactome")
Warning message:
package Reactome is not available (for R version 3.4.3)
>

-------------------------------------------------------------------------------------------------

>  sessionInfo()
R version 3.4.3 (2017-11-30)
Platform: x86_64-conda_cos6-linux-gnu (64-bit)
Running under: Red Hat Enterprise Linux Server release 6.9 (Santiago)

Matrix products: default
BLAS/LAPACK: /dev/shm/anaconda2/envs/r-base-00/lib/R/lib/libRblas.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] BiocInstaller_1.28.0

loaded via a namespace (and not attached):
[1] compiler_3.4.3 tools_3.4.3
>

 

 

install error • 266 views
ADD COMMENTlink modified 17 months ago • written 17 months ago by xinfu.xia0
Answer: Reactome under R-3.4.3 install error
0
gravatar for Martin Morgan
17 months ago by
Martin Morgan ♦♦ 23k
United States
Martin Morgan ♦♦ 23k wrote:

Install Bioconductor packages with BiocInstaller::biocLite("Reactome"). But 'Reactome' is not a Bioconductor package; did you mean ReactomePA or reactome.db ?

ADD COMMENTlink written 17 months ago by Martin Morgan ♦♦ 23k
Answer: Reactome under R-3.4.3 install error
0
gravatar for xinfu.xia
17 months ago by
xinfu.xia0
xinfu.xia0 wrote:

That clarified the question. 

Thanks.  

Closed

ADD COMMENTlink written 17 months ago by xinfu.xia0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 234 users visited in the last hour