Question: Reactome under R-3.4.3 install error
0
gravatar for xinfu.xia
19 months ago by
xinfu.xia0
xinfu.xia0 wrote:

Why I get the following error ?  I can successfully install other packages like BiocGenerics and BiocParallel etc.

Thanks

> install.packages("Reactome")
Warning message:
package Reactome is not available (for R version 3.4.3)
>

-------------------------------------------------------------------------------------------------

>  sessionInfo()
R version 3.4.3 (2017-11-30)
Platform: x86_64-conda_cos6-linux-gnu (64-bit)
Running under: Red Hat Enterprise Linux Server release 6.9 (Santiago)

Matrix products: default
BLAS/LAPACK: /dev/shm/anaconda2/envs/r-base-00/lib/R/lib/libRblas.so

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

other attached packages:
[1] BiocInstaller_1.28.0

loaded via a namespace (and not attached):
[1] compiler_3.4.3 tools_3.4.3
>

 

 

install error • 278 views
ADD COMMENTlink modified 19 months ago • written 19 months ago by xinfu.xia0
Answer: Reactome under R-3.4.3 install error
0
gravatar for Martin Morgan
19 months ago by
Martin Morgan ♦♦ 24k
United States
Martin Morgan ♦♦ 24k wrote:

Install Bioconductor packages with BiocInstaller::biocLite("Reactome"). But 'Reactome' is not a Bioconductor package; did you mean ReactomePA or reactome.db ?

ADD COMMENTlink written 19 months ago by Martin Morgan ♦♦ 24k
Answer: Reactome under R-3.4.3 install error
0
gravatar for xinfu.xia
19 months ago by
xinfu.xia0
xinfu.xia0 wrote:

That clarified the question. 

Thanks.  

Closed

ADD COMMENTlink written 19 months ago by xinfu.xia0
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