Question: UniProt.ws to get Protein function description
0
gravatar for wechat614
18 months ago by
wechat6140
wechat6140 wrote:

I am trying to use UniProt.ws to access UniProt.org to get protein function description. But I cannot find the right column for protein function description (such as P19096: Fatty acid synthetase catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. This multifunctional protein has 7 catalytic activities as an acyl carrier protein). Can anyone help me with this?

Thank you,

zhijun

uniprot.ws • 258 views
ADD COMMENTlink modified 18 months ago by James W. MacDonald51k • written 18 months ago by wechat6140
Answer: UniProt.ws to get Protein function description
0
gravatar for Mike Smith
18 months ago by
Mike Smith4.0k
EMBL Heidelberg / de.NBI
Mike Smith4.0k wrote:

You need to ask for the FUNCTION column in your query e.g.

libraryUniProt.ws)
mouseUp <- UniProt.ws(10090)

select(x = mouseUp, 
       keys = 'P19096', 
       keytype = 'UNIPROTKB',
       columns = 'FUNCTION')
  UNIPROTKB
1    P19096
                                                                                                                                                                                                       FUNCTION
1 FUNCTION: Fatty acid synthetase catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. This multifunctional protein has 7 catalytic activities as an acyl carrier protein.
ADD COMMENTlink written 18 months ago by Mike Smith4.0k
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