Closed:Interpretation of correlation plot between two genes
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Biologist ▴ 110
@biologist-9801
Last seen 4.0 years ago

I have a matrix named "mat" with genes as rows and samples and columns. It has 53k genes and 100 samples. Genes has simple read count data produced by featureCounts. I'm interested in looking at correlation between two genes AARS2, AARSD1. I did like below.

gene1 = which(row.names(eg) == "AARS2")
gene2 = which(row.names(eg) == "AARSD1")
plot(mat[gene1,], mat[gene2,], xlab = 'AARS2', ylab = 'AARSD1')

The above code produced plot like below which is in the link. Can anyone help me in interpreting this plot and what correlation can be told?

https://imgur.com/a/HhFsIbJ

Thank you

r bioconductor differential gene expression correlation • 45 views
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