Pretty much as the title says. Installing via
biocLite is fine, but calling:
... gives me the following error:
Error: package or namespace load failed for ‘Rhtslib’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/Users/lun01/Library/R/3.5/library/Rhtslib/libs/Rhtslib.so': dlopen(/Users/lun01/Library/R/3.5/library/Rhtslib/libs/Rhtslib.so, 6): Library not loaded: /usr/local/opt/xz/lib/liblzma.5.dylib Referenced from: /Users/lun01/Library/R/3.5/library/Rhtslib/libs/Rhtslib.so Reason: image not found
It seems my
liblzma.dylib is located at
/usr/lib instead. I'm not familiar enough with the Mac install process to know why the library location would differ between my machine and that used to build the binary for BioC, but it's not the first time something like this has happened, see https://stat.ethz.ch/pipermail/bioc-devel/2016-May/009317.html for a previous instance.
R version 3.5.0 RC (2018-04-16 r74624) Platform: x86_64-apple-darwin15.6.0 (64-bit) Running under: OS X El Capitan 10.11.6 Matrix products: default BLAS: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRblas.0.dylib LAPACK: /Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libRlapack.dylib locale:  en_GB.UTF-8/en_GB.UTF-8/en_GB.UTF-8/C/en_GB.UTF-8/en_GB.UTF-8 attached base packages:  stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached):  zlibbioc_1.26.0 compiler_3.5.0