Question: DEseq2 Replicate Not Normalizing
0
gravatar for mpw183
10 months ago by
mpw1830
mpw1830 wrote:

Hi there,

For some reason, one of the replicates of my htseq-count files is not normalizing correctly when run through DEseq2. I have attempted to change settings, re-map the original .fasta file, and all of my efforts still lead to the same replicate not normalizing. I believe that it has something to do with the htseq-count values of that replicate, but I haven't been able to find any reason why this would be occurring or how to fix it. Any guidance would be appreciated, thanks!

normalization deseq2 • 178 views
ADD COMMENTlink written 10 months ago by mpw1830

Can you show what you mean by "not normalizing"?

Also please post your R code and your sessionInfo(). See the posting guide for more tips.

ADD REPLYlink written 10 months ago by Michael Love23k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 301 users visited in the last hour