Remove highly similar terms from a GO gene set enrichment analysis
0
0
Entering edit mode
@jansoderman-11752
Last seen 4.0 years ago

Hi,

Can you please suggest a method for removing highly similar GO terms from the gseaResult object produced by the gseGO function of the clusterProfiler package?

When conducting an GO over-representation analysis using the enrichGO function of the same packge there is a simplify function for removing highly similar GO terms from the enrichResult object. I’m unable to find any information on the corresponding function for the gseaResult object.

Many thanks for any help and guidance.

/Jan

clusterProfiler gseGO gene ontology go semantic similarity gene set enrichment analysis • 1.3k views
ADD COMMENT
0
Entering edit mode

will implement the method for gseGO output in future release.

ADD REPLY

Login before adding your answer.

Traffic: 812 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6