error with STRINGdb package to download the graph
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Salvo88 ▴ 20
@salvo88-14379
Last seen 2.3 years ago

Hi everyone,

I tried to download the start using STRINGdb but it did not work

this is the code I tried to use :

library(STRINGdb)
string_db <- STRINGdb$new(version="10", species=9606,
                          score_threshold=400, input_directory="" )
full.graph <- string_db$get_graph()

while using this function:

string_db <- STRINGdb$new(version="10", species=9606,
                          score_threshold=400, input_directory="" )

I have this error:

Error in open.connection(file, "rt") : cannot open the connection
In addition: Warning message:
In open.connection(file, "rt") :
  InternetOpenUrl failed

I tried to look for past questions and I found this one but is not helpful.

unable to connect to 'string.uzh.ch' on port 80

Thank you for your help,

Salvo

stringdb R • 346 views
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Can you please also provide your sessionInfo() ? I just tried running the above commands and did not receive an ERROR so I am curious to your system os and version information.

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