COEXNET package in bioconductor
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gbahramali • 0
@gbahramali-16355
Last seen 3.4 years ago

I use COEXNET package  in bioconductor for draw co expression network

but when  i tried example of GSE IN package is good but in other glp  show this error

 

"getInfo(GSE = "GSE34228", GPL = "GPL4133",directory = ".")

trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE34nnn/GSE34228/suppl//GSE34228_RAW.tar?tool=geoquery' Content type 'application/x-tar' length 482160640 bytes (459.8 MB) downloaded 459.8 MB

File stored at: ./GPL4133.soft

gene_table <- geneSymbol(GPL = "GPL4133",directory = system.file("extdata",package = "coexnet")) Error in data.frame(sym$ID, gsub(" /// ", "-", sym$GENE SYMBOL), stringsAsFactors = FALSE) : arguments imply differing number of rows: 45220, 0 "

HOW CAN DEAL WITH THIS ERROR
 please help me

bioconductor R coexnet • 347 views
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