Question: COEXNET package in bioconductor
0
gravatar for gbahramali
17 months ago by
gbahramali0
gbahramali0 wrote:

I use COEXNET package  in bioconductor for draw co expression network

but when  i tried example of GSE IN package is good but in other glp  show this error

 

"getInfo(GSE = "GSE34228", GPL = "GPL4133",directory = ".")

trying URL 'https://ftp.ncbi.nlm.nih.gov/geo/series/GSE34nnn/GSE34228/suppl//GSE34228_RAW.tar?tool=geoquery' Content type 'application/x-tar' length 482160640 bytes (459.8 MB) downloaded 459.8 MB

File stored at: ./GPL4133.soft

gene_table <- geneSymbol(GPL = "GPL4133",directory = system.file("extdata",package = "coexnet")) Error in data.frame(sym$ID, gsub(" /// ", "-", sym$GENE SYMBOL), stringsAsFactors = FALSE) : arguments imply differing number of rows: 45220, 0 "

HOW CAN DEAL WITH THIS ERROR
 please help me

R bioconductor coexnet • 215 views
ADD COMMENTlink modified 17 months ago by shepherl ♦♦ 1.7k • written 17 months ago by gbahramali0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 342 users visited in the last hour