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Question: bpaggregate with formula returns strange error message
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gravatar for maltethodberg
11 weeks ago by
maltethodberg100
UCPH
maltethodberg100 wrote:

Is bpaggregate from the BiocParallel package intended to be a drop-in replacement for aggregate? I am getting a somewhat cryptic error message when trying to use it:

library(BiocParallel)
aggregate(Sepal.Length~Species, data=iris, FUN=sum) # Works
bpaggregate(Sepal.Length~Species, data=iris, FUN=sum) # Return error

# Error in eval(extras, data, env) : object 'BPREDO' not found 
ADD COMMENTlink modified 10 weeks ago by Martin Morgan ♦♦ 22k • written 11 weeks ago by maltethodberg100
3
gravatar for Martin Morgan
10 weeks ago by
Martin Morgan ♦♦ 22k
United States
Martin Morgan ♦♦ 22k wrote:

Thanks for the report; this should be fixed in BiocParallel version 1.14.2 (release) / 1.15.7 (devel) via biocLite() in at about noon Eastern time Monday, or via BiocInstaller::biocLite("Bioconductor/BiocParallel", ref="RELEASE_3_7") / ref = "master" now.

ADD COMMENTlink written 10 weeks ago by Martin Morgan ♦♦ 22k
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