single cell RNA-seq pipeline
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Bogdan ▴ 670
@bogdan-2367
Last seen 5 months ago
Palo Alto, CA, USA

Dear all,

please would you advise about a single cell RNA-seq pipeline/scRNA-seq libraries in R/BioC that are both mature and user-friendly that we can use ? Thank you very much, 

 

bogdan

 

rnaseq scRNA-seq • 1.3k views
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In general, look at https://bioconductor.org/packages and then the 'Workflows' biocViews terms.

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Aaron Lun ★ 28k
@alun
Last seen 7 hours ago
The city by the bay

Yes, I can.

http://bioconductor.org/packages/devel/workflows/html/simpleSingleCell.html

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You gentlemen are awesome ! Aaron and Martin, thank you very much !

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