Question: tximport latest version on bioconductor and bioconda
gravatar for sebio
3 months ago by
sebio0 wrote:

When can we expect the latest versions to be available on bioconductor and bioconda? I am particularly interested to use the "dtuScaleTPM" method...

Cheers, Seb

ADD COMMENTlink modified 3 months ago by James W. MacDonald48k • written 3 months ago by sebio0

New features are added to Bioconductor's 'devel' branch. This branch becomes the 'release' once every six months. The most recent release, on May 1, was release 3.7 bioconda is currently using the previous release, version 3.6, so the most recent 'new feature' available in bioconda was introduced into 'devel' before October 31, 2017. If you want to use new features, then bioconda is NOT currently the correct solution.

ADD REPLYlink written 3 months ago by Martin Morgan ♦♦ 22k
gravatar for James W. MacDonald
3 months ago by
United States
James W. MacDonald48k wrote:

You can use dtuScaleTPM with the devel version of tximport, which requires the devel version of Bioc.

ADD COMMENTlink written 3 months ago by James W. MacDonald48k
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