Guidance to handle .CEL file in R

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aacharya • 0

@aacharya-16535

Last seen 5.8 years ago

HI ,

I am Avi, I am am beginner in R . I need some help to run a complete script for .CEL file where I can have fold change FDR and Anova, PCA, Volcano, Heatmap, Quality of the CHIP scan etc.. can anyone please help me . I will be very grateful to you.

Best regards

Aviseka

R .cel fiels microarray mouse4302 • 1.3k views

ADD COMMENT • link 5.8 years ago aacharya • 0

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You might consider reading through some of the Bioconductor workflows that would be appropriate for your data. Or searching the Bioconductor Software packages for key terms like 'affymetrix' or 'chip' and reading through the package vignette.

ADD REPLY • link 5.8 years ago shepherl 3.8k

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To add to Bioconductor workflows linked to by Lori: the Affymetrix workflow at the F1000 here is also a good starter; for online QC analysis ArrayAnalysis.org might be handy.

ADD REPLY • link 5.8 years ago Guido Hooiveld ★ 3.9k

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Thanks ! I will go through

ADD REPLY • link 5.8 years ago aacharya • 0

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Sure! I will look read the workflow

ADD REPLY • link 5.8 years ago aacharya • 0

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