MethylSig is not giving DMRs with no replicates
Entering edit mode
nilaycan • 0
Last seen 3.2 years ago

Hello all,

I am trying to run MethylSig with my no biological or technical replicate data-sets. In many forums and their manual also, they declared that if you do not have "any replicates", you should use Fisher's exact test instead of t-test. I changed properly all the functions and parameters according to this criteria but I am getting the same error. The error is : Error during wrapup: 'x' must be an array of at least two dimensions. methylSigCalc function causes this error most probably. 

Is it possible that I am doing something wrong or improper? Can anyone give me some idea about this issue?

Thanks in advance,


methylsig no replicates dmr • 312 views

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