Question: GEOquery install problem
0
gravatar for 261092095
15 months ago by
26109209510
26109209510 wrote:

When I use the following code to install the 'GEOquery' package, the following error message always appears. When I select "y", I will always prompt the installation error, I hope to get your help!

> source("http://bioconductor.org/biocLite.R")
Bioconductor version 3.2 (BiocInstaller 1.20.3), ?biocLite for help
A new version of Bioconductor is available after installing the most recent version of R; see
  http://bioconductor.org/install
> biocLite('GEOquery')
wget: /pub/anaconda3/lib/libcrypto.so.1.0.0: no version information available (required by wget)
wget: /pub/anaconda3/lib/libssl.so.1.0.0: no version information available (required by wget)
wget: /pub/anaconda3/lib/libssl.so.1.0.0: no version information available (required by wget)
BioC_mirror: http://bioconductor.org

.....

Update all/some/none? [a/s/n]: 
a
Warning in install.packages(update[instlib == l, "Package"], l, contriburl = contriburl,  :
  'lib = "/pub/anaconda3/lib/R/library"' is not writable
Would you like to use a personal library instead?  (y/n) y

wget: /pub/anaconda3/lib/libcrypto.so.1.0.0: no version information available (required by wget)
wget: /pub/anaconda3/lib/libssl.so.1.0.0: no version information available (required by wget)
wget: /pub/anaconda3/lib/libssl.so.1.0.0: no version information available (required by wget)
--2018-07-25 22:42:27--  https://cran.rstudio.com/src/contrib/acepack_1.4.1.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... wget: /pub/anaconda3/lib/libcrypto.so.1.0.0: no version information available (required by wget)
wget: /pub/anaconda3/lib/libssl.so.1.0.0: no version information available (required by wget)
wget: /pub/anaconda3/lib/libssl.so.1.0.0: no version information available (required by wget)
--2018-07-25 22:42:27--  https://cran.rstudio.com/src/contrib/acepack_1.4.1.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 13.32.110.202
Connecting to cran.rstudio.com (cran.rstudio.com)|13.32.110.202|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 34848 (34K) [application/x-gzip]
Saving to: ‘/tmp/Rtmppfg8gB/downloaded_packages/acepack_1.4.1.tar.gz’

     0K .......... .......... .......... ....                 100%  148K=0.2s

2018-07-25 22:42:34 (148 KB/s) - ‘/tmp/Rtmppfg8gB/downloaded_packages/acepack_1.4.1.tar.gz’ saved [34848/34848]

wget: /pub/anaconda3/lib/libcrypto.so.1.0.0: no version information available (required by wget)
wget: /pub/anaconda3/lib/libssl.so.1.0.0: no version information available (required by wget)
wget: /pub/anaconda3/lib/libssl.so.1.0.0: no version information available (required by wget)
--2018-07-25 22:42:34--  https://cran.rstudio.com/src/contrib/assertthat_0.2.0.tar.gz
Resolving cran.rstudio.com (cran.rstudio.com)... 13.32.110.202
Connecting to cran.rstudio.com (cran.rstudio.com)|13.32.110.202|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 11612 (11K) [application/x-gzip]
Saving to: ‘/tmp/Rtmppfg8gB/downloaded_packages/assertthat_0.2.0.tar.gz’

 

 

geoquery • 236 views
ADD COMMENTlink modified 15 months ago • written 15 months ago by 26109209510

It looks like these are informational messages, rather than errors? And it looks like a conda problem, not a Bioconductor problem?

ADD REPLYlink written 15 months ago by Martin Morgan ♦♦ 24k
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