Question: EnrichMap error even it doesn't exist in the last commit
0
gravatar for alper.kucukural
14 months ago by
UMass Medical School Worcester MA
alper.kucukural10 wrote:

Hi, 

I have removed enrichMap function from debrowser but I still get the error below.

http://bioconductor.org/checkResults/devel/bioc-LATEST/debrowser/malbec1-install.html

Error : object ‘enrichMap’ is not exported by 'namespace:DOSE'
ERROR: lazy loading failed for package ‘debrowser’
* removing ‘/home/biocbuild/bbs-3.8-bioc/R/library/debrowser

So, it doesn't exist anywhere in the project. The last commit # 69b8702 is also right. But, how can it get this error? Is there anything I am missing?

Thanks,

Alper

 

build error • 191 views
ADD COMMENTlink modified 14 months ago by Martin Morgan ♦♦ 23k • written 14 months ago by alper.kucukural10
Answer: EnrichMap error even it doesn't exist in the last commit
0
gravatar for Martin Morgan
14 months ago by
Martin Morgan ♦♦ 23k
United States
Martin Morgan ♦♦ 23k wrote:

This sounds like a package development question, and should be asked on the bioc-devel mailing list.

This commit

/DOSE master$ git show a51d3fc906b73f205ef0589f9aff5609347eec83 NAMESPACEcommit a51d3fc906b73f205ef0589f9aff5609347eec83
Author: guangchuang yu <guangchuangyu@gamil.com>
Date:   Wed Jun 20 11:18:50 2018 +0800

    update docs

diff --git a/NAMESPACE b/NAMESPACE
index c5f4a2f..bbe6375 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -25,7 +25,6 @@ export(doSim)
 export(enrichDGN)
 export(enrichDGNv)
 export(enrichDO)
-export(enrichMap)
 export(enrichNCG)
 export(facet_grid)
 export(gene2DO)

removes enrichMap from the exports of DOSE; whether that was intentional or not I do not know; presumably maintainer("DOSE") does.

ADD COMMENTlink written 14 months ago by Martin Morgan ♦♦ 23k

Reading your question again, the problem is that your NAMESPACE still references enrichMap

git/debrowser master$ grep -r enrichMap *
NAMESPACE:importFrom(DOSE,enrichMap)
git/debrowser master$ git log --oneline -n 2
9d0ef55 version change
33b41e7 Merge branch 'master' of git.bioconductor.org:packages/debrowser

 

ADD REPLYlink written 14 months ago by Martin Morgan ♦♦ 23k

OK great! I'll fix it.

ADD REPLYlink written 14 months ago by alper.kucukural10
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