Question: I am unable to use Rsubread. Thank you in advance.
gravatar for swarajgaikwad15
7 days ago by
swarajgaikwad150 wrote:

> biocLite("Rsubread")


Using Bioconductor 3.6 (BiocInstaller 1.28.0), R 3.4.0 (2017-04-21).

Installing package(s) ‘Rsubread’

Package which is only available in source form, and may need compilation of C/C++/Fortran: ‘Rsubread’

  These will not be installed

installation path not writeable, unable to update packages: boot, cluster, foreign, MASS, Matrix, mgcv, nlme, rpart, survival

Old packages: 'scales'

Update all/some/none? [a/s/n]: 



  There is a binary version available but the source version is later:

       binary source needs_compilation

scales  0.5.0  1.0.0              TRUE


  Binaries will be installed

trying URL ''

Content type 'application/zip' length 694088 bytes (677 KB)

downloaded 677 KB


package ‘scales’ successfully unpacked and MD5 sums checked


The downloaded binary packages are in


> library("Rsubread")

Error in library("Rsubread") : there is no package called ‘Rsubread’

ADD COMMENTlink modified 7 days ago by Gordon Smyth34k • written 7 days ago by swarajgaikwad150
gravatar for Gordon Smyth
7 days ago by
Gordon Smyth34k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
Gordon Smyth34k wrote:

Rsubread is only available for Unix and Mac. It is not available for Windows.

ADD COMMENTlink written 7 days ago by Gordon Smyth34k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 292 users visited in the last hour