Search
Question: How to select a specific onthology after runing enrichGO for all 3 onthology
0
gravatar for MAP
6 days ago by
MAP0
MAP0 wrote:

Hi all,

I have run a GO enrichment analysis using enrichGO() for all 3 onthologies at once:

analysis <- enrichGO(gene = names_down_uniprot, OrgDb = "org.Mm.eg.db",
   keyType = "UNIPROT", ont = "ALL", pvalueCutoff = 0.05,
   pAdjustMethod = "fdr", universe = background_uniprot, qvalueCutoff = 0.25,
   minGSSize = 10, maxGSSize = 500, readable = FALSE, pool = FALSE)

The result looks good and as expected.

Do anyone now how to subset this results for a specific onthology? My idea is to represent graphically (using  barplot, cnetplot, etc) only one of of them (in particular BP).

Thanks in advance,

Miguel

 

ADD COMMENTlink modified 6 days ago • written 6 days ago by MAP0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 291 users visited in the last hour