What does this mean? And why is it nearly impossible to get this to work? I have cleared the cache, taken various suggestions from ExperimentHub/BiocManager, and none of it helps. This... kind of sucks, to be honest.
install("sesameData", localHub=TRUE) Bioconductor version 3.8 (BiocManager 1.30.1), R 3.5.0 (2018-04-23) Installing package(s) 'sesameData' trying URL 'https://bioconductor.org/packages/3.8/data/experiment/src/contrib/sesameData_0.99.3.tar.gz' Content type 'application/x-gzip' length 1529903 bytes (1.5 MB) ================================================== downloaded 1.5 MB * installing *source* package ‘sesameData’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded Warning: database may not be current database: ‘/home/tim.triche//.ExperimentHub/experimenthub.sqlite3’ reason: An unknown option was passed in to libcurl Error: package or namespace load failed for ‘sesameData’: .onAttach failed in attachNamespace() for 'sesameData', details: call: value[[3L]](cond) error: failed to connect reason: An unknown option was passed in to libcurl Consider rerunning with 'localHub=TRUE' Error: loading failed Execution halted ERROR: loading failed * removing ‘/primary/projects/triche/R-tim/x86_64-pc-linux-gnu-library/3.5/sesameData’
Anything immediately obvious that can be done to fix this? (Ideally the solution will not involve "uninstall and reinstall every piece of software and library on the cluster," which was never required for .db0 or experiment packages, regardless of their other faults)
Students in a recent workshop mentioned that using ExperimentHub for data packages was breaking the examples, and now I can replicate this at a higher level (it breaks a working install).