Question: Scoring DNA motifs by conservation
gravatar for martin.busch
15 months ago by
martin.busch0 wrote:

Dear BC community,

Currently I am puzzled with the following problem: I have a 1500 bp rat gDNA stretch for which I have various (n=35) motifs and I want to know which ones are the most conserved motifs amongst my 35 motifs. Is there any easy and feasible way to extract conservation scores for my motifs from a publicly available source (using R) or to provide additional 1500 bp strectehs of human/mouse/pig/chimpanzee in order to get an idea of conservation of my motifs?

Any help is highly appreciated!



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