Question: Scoring DNA motifs by conservation
0
gravatar for martin.busch
15 months ago by
martin.busch0 wrote:

Dear BC community,

Currently I am puzzled with the following problem: I have a 1500 bp rat gDNA stretch for which I have various (n=35) motifs and I want to know which ones are the most conserved motifs amongst my 35 motifs. Is there any easy and feasible way to extract conservation scores for my motifs from a publicly available source (using R) or to provide additional 1500 bp strectehs of human/mouse/pig/chimpanzee in order to get an idea of conservation of my motifs?

Any help is highly appreciated!

Best,

Martin

ADD COMMENTlink written 15 months ago by martin.busch0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 196 users visited in the last hour