I am about using customProDB for the first time and I have several questions regarding the package functionalities:
1) Does customProDB accept phased VCF file and produce accordingly the different protein products from each allele depending on the phase in the VCF file?
2) How does customProDB treat multiple variants affecting to a single amino acid (single codon)? Let's say that we have 2 non-synonymous variants at different positions of a given codon.
Thank you in advance,