Question: MultiAssayExperiment:combine two multiassayexperiment object
0
gravatar for mario.zanfardino
10 months ago by
Naples (Italy)
mario.zanfardino150 wrote:

how can i combine two multiassayexperiment object without using Experiment extraction and subsequently combination in MAE?

Example: 

> MAE1
A MultiAssayExperiment object of 2 listed
 experiments with user-defined names and respective classes. 
 Containing an ExperimentList class object of length 2: 
 [1] mae1_exp_1: SummarizedExperiment with 20 rows and 10 columns 
 [2] mae1_exp_2: SummarizedExperiment with 20 rows and 10 columns 
> MAE2
A MultiAssayExperiment object of 2 listed
 experiments with user-defined names and respective classes. 
 Containing an ExperimentList class object of length 2: 
 [1] mae2_exp_1: SummarizedExperiment with 20 rows and 10 columns 
 [2] mae2_exp_2: SummarizedExperiment with 20 rows and 10 columns 

> PSEUDOCODE: MAE3 <-c(MAE1, MAE2) 
> MAE3
A MultiAssayExperiment object of 4 listed
 experiments with user-defined names and respective classes. 
 Containing an ExperimentList class object of length 4: 
 [1] mae1_exp_1: SummarizedExperiment with 20 rows and 10 columns 
 [2] mae1_exp_2: SummarizedExperiment with 20 rows and 10 columns 
 [3] mae2_exp_1: SummarizedExperiment with 20 rows and 10 columns 
 [4] mae2_exp_2: SummarizedExperiment with 20 rows and 10 columns 
multiassayexperiment • 243 views
ADD COMMENTlink modified 10 months ago by Marcel Ramos ♦♦ 390 • written 10 months ago by mario.zanfardino150
1

I get the idea but one requirement would be to keep experiment names unique across `MultiAssayExperiment` objects. I am coming up with a patch to allow this. Thanks, MR

ADD REPLYlink modified 10 months ago • written 10 months ago by Marcel Ramos ♦♦ 390
Answer: MultiAssayExperiment:combine two multiassayexperiment object
2
gravatar for Marcel Ramos
10 months ago by
Marcel Ramos ♦♦ 390
United States
Marcel Ramos ♦♦ 390 wrote:

Hi Mario, Thank you for posting this enhancement request.

I have added it to MultiAssayExperiment 1.7.19 (devel). The stipulation is that experiment names must be unique across MultiAssayExperiment objects.

Best regards, Marcel

ADD COMMENTlink written 10 months ago by Marcel Ramos ♦♦ 390
1

Thank you very much Marcel!

ADD REPLYlink written 10 months ago by mario.zanfardino150
1

    Prego!     

ADD REPLYlink written 10 months ago by Marcel Ramos ♦♦ 390
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