Question: Need Guidance Regarding the Results of Microarray Pipeline
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gravatar for salmatariq080
14 months ago by
salmatariq0800 wrote:

I have to use your pipeline for micro-array analysis(Title:An end to end workflow for differential gene expression using Affymetrix microarrays). I have successfully executed the R code but the problem is that the results obtained by this pipeline are not replicas of the results mentioned in the research paper. I have used the same dataset that was used in this research article. Can you suggest that why my results are different?

thanks

microarray maendtoend • 240 views
ADD COMMENTlink modified 14 months ago by Gordon Smyth39k • written 14 months ago by salmatariq0800
Answer: Need Guidance Regarding the Results of Microarray Pipeline
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gravatar for Gordon Smyth
14 months ago by
Gordon Smyth39k
Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
Gordon Smyth39k wrote:

I am guessing that you're referring to this F1000Research article:

https://f1000research.com/articles/5-1384/

This article is now available as the Bioconductor workflow maEndtoEnd. Complete code to reproduce the workflow is available here:

https://www.bioconductor.org/packages/devel/workflows/html/maEndToEnd.html

ADD COMMENTlink modified 14 months ago • written 14 months ago by Gordon Smyth39k

I was actually referring to the first version of this research article https://f1000research.com/articles/5-1384/v1. Is it better to use the latest version can't we use the previous one. 

ADD REPLYlink written 14 months ago by salmatariq0800
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