Question: How to extract SNPs from multiple alignment fasta file?
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gravatar for pltbiotech_tkarthi
12 months ago by
pltbiotech_tkarthi0 wrote:

I am using following scripts to read fasta files

>library(Biostrings)
>dna <- readDNAStringSet("<<PATH TO FASTA FILE>>")

But, further I would like to extract SNPs from these alignment file, but I don't know how extract the SNPs.

Does anyone know?

 

ADD COMMENTlink modified 12 months ago by Martin Morgan ♦♦ 23k • written 12 months ago by pltbiotech_tkarthi0
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