Question: Indexing large chromosomes (like wheat) bam files in Rsamtools
gravatar for saripalligautam86
14 months ago by
saripalligautam8610 wrote:

Hello all,


Is there a possible way to index bam files for large chromosomes(like wheat) using Rsamtools? Like in case of samtools using linux, .CSI (coordinate sorted index) is possible whereby .bam files for large chromosomes can be indexed. However, the .CSI index generated using samtools (through linux) is not compatible with MEDIPS or QSEA packages which are used to calculate CpG densities for MeDIP-Seq data.



rsamtools medips qsea • 193 views
ADD COMMENTlink written 14 months ago by saripalligautam8610
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