Can not install MINFI in WinDow 10 correctly
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Entering edit mode
sunday2009 • 0
@sunday2009-17823
Last seen 5.5 years ago

Hi, I hope any expert user can help me with this question to get MINFI started on my WINDOW 10 desktop  

The problem :

I tried to install MINFI in R Studio in Window 10, during the installation process using the following standard codes

source("https://bioconductor.org/biocLite.R")

biocLite("minfi")

It shows an error message during the installation process as follows:

* installing *source* package 'GenomicFeatures' ...

** R

** inst

** byte-compile and prepare package for lazy loading

Error: package or namespace load failed for 'GenomeInfoDb' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):

 there is no package called 'GenomeInfoDbData'

Error : package 'GenomeInfoDb' could not be loaded

ERROR: lazy loading failed for package 'GenomicFeatures'

* removing 'C:/Users/zcluo/Documents/R/R-3.5.1/library/GenomicFeatures'

In R CMD INSTALL

* installing *source* package 'GenomeInfoDbData' ...

==end  =

 

Therefore, the installation has some problem, when I try to start MINFI  use the codes:

library(minfi)

 Then. I got the following error message:

Error: package or namespace load failed for ‘bumphunter’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):

 there is no package called ‘GenomicFeatures’

Error: package ‘bumphunter’ could not be loaded

Then, I tried to fix the "bumphunter' problem, using the following re-installation codes:

remove.packages("bumphunter")

source("https://bioconductor.org/biocLite.R")

biocLite("bumphunter")

library(bumphunter)

Unfortunately, it does not work. During the installation, it asked for permission to renew all or part of the installation, I answered "a" for all.

So tried to install the MINFI a second time in another day, and the problems pop out repeatedly with the same error messages.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Warning message:

In install.packages(pkgs = doing, lib = lib, ...) :

  installation of package ‘GenomicFeatures’ had non-zero exit status

minfi Error: package ‘bumphunter’ could not be loaded • 1.4k views
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Entering edit mode
@james-w-macdonald-5106
Last seen 10 hours ago
United States

Any time you see an error like

 there is no package called 'GenomeInfoDbData'

That is intended to be informative, and means that you are missing a package called GenomeInfoDbData. The cure for that error is to install

biocLite("GenomeInfoDbData")

and then go back and try to install minfi again.

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