I am trying to get gene name as well as geneid and tx id, but I do not know how. tx2gene.gencode.M19 GRCm38.p6.csv is list of GENEID and TXID. the list of gene and transcript name is in another file like tx2gene.csv
could you please guide how can I do it?
tx2gene <- read_csv(file.path(dir, "tx2gene.gencode.M19 GRCm38.p6.csv"))
txi <- tximport(files, type = "salmon", tx2gene = tx2gene)
with theses commands I jut get geneid and TXid, I'd like to have genesymbol or genename. should I kept genename columns is quant.sf file to do that?