How to monitor the performance of MS-based omics data?

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hemi.luan ▴ 10

@hemiluan-11345

Last seen 5.5 years ago

How to monitor the performance of MS-based omics data? Which package can be used for large-scale samples?

normalization • 547 views

ADD COMMENT • link updated 5.5 years ago by maxwelljohny123 • 0 • written 5.5 years ago by hemi.luan ▴ 10

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There's no package that gives quality control metrics for all of the different varieties of proteomics assays. You could rephrase your question to specify if you are considering DDA, DIA or SRM proteomics.

ADD REPLY • link 5.5 years ago Dario Strbenac ★ 1.5k

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Consider also searching for omics in the biocViews search box with any other key terms to get a potential list of packages

http://bioconductor.org/packages/release/BiocViews.html#___Software

Also consider proteomic workflows:

http://bioconductor.org/packages/release/BiocViews.html#___ProteomicsWorkflow

ADD REPLY • link 5.5 years ago shepherl 3.8k

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