GenomicFeatures won't install for 3.8 release
1
0
Entering edit mode
@mjsteinbaugh
Last seen 5 months ago
Cambridge, MA

I seem to be running into a bug with GenomicFeatures installation for Bioconductor 3.8 (Red Hat Linux 3.10.0-957.el7.x86_64):

> BiocManager::install("GenomicFeatures", version = "3.8")
Bioconductor version 3.8 (BiocManager 1.30.3), R 3.5.1
  (2018-07-02)
Installing package(s) 'GenomicFeatures'
Warning: package ‘GenomicFeatures’ is not available (for R version 3.5.1)

All other Bioconductor packages install correctly on my machine, and I can install GenomicFeatures from the GitHub repo. It seems to be an issue specific to BiocManager.

Best,
Mike

installation biocmanager • 1.0k views
ADD COMMENT
1
Entering edit mode
shepherl 3.8k
@lshep
Last seen 5 minutes ago
United States

Depending on what OS you are using, GenomicFeatures has a TIMEOUT on linux and ERROR on windows as indicated by the build report. Until there is a successful build on that platform it will remain unavailable. We are looking into these build failures.

ADD COMMENT

Login before adding your answer.

Traffic: 740 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6