Search
Question: Can not install packages
0
gravatar for Mithil Gaikwad
12 days ago by
Tezpur University, India
Mithil Gaikwad0 wrote:

>install.packages("ballgown")
Installing package into ‘/home/mithil/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
Warning in install.packages :
  package ‘ballgown’ is not available (for R version 3.4.4)

> install.packages("genefilter")
Installing package into ‘/home/mithil/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
Warning in install.packages :
  package ‘genefilter’ is not available (for R version 3.4.4)

 

> devtools::install_github('alyssafrazee/RSkittleBrewer')
Error in curl::curl_fetch_memory(url, handle = h) :
  Failed to connect to api.github.com port 443: Connection timed out

 

> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.1 LTS

Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.7.1
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.7.1

locale:
 [1] LC_CTYPE=en_IN.UTF-8       LC_NUMERIC=C               LC_TIME=en_IN.UTF-8       
 [4] LC_COLLATE=en_IN.UTF-8     LC_MONETARY=en_IN.UTF-8    LC_MESSAGES=en_IN.UTF-8   
 [7] LC_PAPER=en_IN.UTF-8       LC_NAME=C                  LC_ADDRESS=C              
[10] LC_TELEPHONE=C             LC_MEASUREMENT=en_IN.UTF-8 LC_IDENTIFICATION=C       

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.28.0

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.19      rstudioapi_0.8    magrittr_1.5      usethis_1.4.0    
 [5] devtools_2.0.1    pkgload_1.0.2     R6_2.3.0          rlang_0.3.0.1    
 [9] tools_3.4.4       pkgbuild_1.0.2    sessioninfo_1.1.1 cli_1.0.1        
[13] withr_2.1.2       remotes_2.0.2     assertthat_0.2.0  digest_0.6.18    
[17] rprojroot_1.3-2   crayon_1.3.4      processx_3.2.0    callr_3.0.0      
[21] base64enc_0.1-3   fs_1.2.6          ps_1.2.1          curl_3.1         
[25] glue_1.3.0        memoise_1.1.0     compiler_3.4.4    desc_1.2.0       
[29] backports_1.1.2   prettyunits_1.0.2

 

 

What could be the problem?

ADD COMMENTlink modified 12 days ago by Mike Smith3.1k • written 12 days ago by Mithil Gaikwad0
0
gravatar for Lluís Revilla Sancho
12 days ago by
European Union
Lluís Revilla Sancho430 wrote:

To install packages from Bioconductor you need the BiocManager package:

install.packages("BiocManager")
BiocManager::install(c("ballgown", "genefilter"))

However, to get the latest packages from Bioconductor you'll need R version 3.5 not the R version 3.4.4 you are using.

ADD COMMENTlink written 12 days ago by Lluís Revilla Sancho430
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.2.0
Traffic: 400 users visited in the last hour