Question: Can not install packages
gravatar for Mithil Gaikwad
12 days ago by
Tezpur University, India
Mithil Gaikwad0 wrote:

Installing package into ‘/home/mithil/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
Warning in install.packages :
  package ‘ballgown’ is not available (for R version 3.4.4)

> install.packages("genefilter")
Installing package into ‘/home/mithil/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
Warning in install.packages :
  package ‘genefilter’ is not available (for R version 3.4.4)


> devtools::install_github('alyssafrazee/RSkittleBrewer')
Error in curl::curl_fetch_memory(url, handle = h) :
  Failed to connect to port 443: Connection timed out


> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.1 LTS

Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/

 [1] LC_CTYPE=en_IN.UTF-8       LC_NUMERIC=C               LC_TIME=en_IN.UTF-8       
 [7] LC_PAPER=en_IN.UTF-8       LC_NAME=C                  LC_ADDRESS=C              

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.28.0

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.19      rstudioapi_0.8    magrittr_1.5      usethis_1.4.0    
 [5] devtools_2.0.1    pkgload_1.0.2     R6_2.3.0          rlang_0.3.0.1    
 [9] tools_3.4.4       pkgbuild_1.0.2    sessioninfo_1.1.1 cli_1.0.1        
[13] withr_2.1.2       remotes_2.0.2     assertthat_0.2.0  digest_0.6.18    
[17] rprojroot_1.3-2   crayon_1.3.4      processx_3.2.0    callr_3.0.0      
[21] base64enc_0.1-3   fs_1.2.6          ps_1.2.1          curl_3.1         
[25] glue_1.3.0        memoise_1.1.0     compiler_3.4.4    desc_1.2.0       
[29] backports_1.1.2   prettyunits_1.0.2



What could be the problem?

ADD COMMENTlink modified 12 days ago by Mike Smith3.1k • written 12 days ago by Mithil Gaikwad0
gravatar for Lluís Revilla Sancho
12 days ago by
European Union
Lluís Revilla Sancho430 wrote:

To install packages from Bioconductor you need the BiocManager package:

BiocManager::install(c("ballgown", "genefilter"))

However, to get the latest packages from Bioconductor you'll need R version 3.5 not the R version 3.4.4 you are using.

ADD COMMENTlink written 12 days ago by Lluís Revilla Sancho430
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