Question: Can not install packages
gravatar for Mithil Gaikwad
7 months ago by
Tezpur University, India
Mithil Gaikwad0 wrote:

Installing package into ‘/home/mithil/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
Warning in install.packages :
  package ‘ballgown’ is not available (for R version 3.4.4)

> install.packages("genefilter")
Installing package into ‘/home/mithil/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
Warning in install.packages :
  package ‘genefilter’ is not available (for R version 3.4.4)


> devtools::install_github('alyssafrazee/RSkittleBrewer')
Error in curl::curl_fetch_memory(url, handle = h) :
  Failed to connect to port 443: Connection timed out


> sessionInfo()
R version 3.4.4 (2018-03-15)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 18.04.1 LTS

Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/

 [1] LC_CTYPE=en_IN.UTF-8       LC_NUMERIC=C               LC_TIME=en_IN.UTF-8       
 [7] LC_PAPER=en_IN.UTF-8       LC_NAME=C                  LC_ADDRESS=C              

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] BiocInstaller_1.28.0

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.19      rstudioapi_0.8    magrittr_1.5      usethis_1.4.0    
 [5] devtools_2.0.1    pkgload_1.0.2     R6_2.3.0          rlang_0.3.0.1    
 [9] tools_3.4.4       pkgbuild_1.0.2    sessioninfo_1.1.1 cli_1.0.1        
[13] withr_2.1.2       remotes_2.0.2     assertthat_0.2.0  digest_0.6.18    
[17] rprojroot_1.3-2   crayon_1.3.4      processx_3.2.0    callr_3.0.0      
[21] base64enc_0.1-3   fs_1.2.6          ps_1.2.1          curl_3.1         
[25] glue_1.3.0        memoise_1.1.0     compiler_3.4.4    desc_1.2.0       
[29] backports_1.1.2   prettyunits_1.0.2



What could be the problem?

ADD COMMENTlink modified 7 months ago by Mike Smith3.7k • written 7 months ago by Mithil Gaikwad0
Answer: Can not install packages
gravatar for Lluís Revilla Sancho
7 months ago by
European Union
Lluís Revilla Sancho480 wrote:

To install packages from Bioconductor you need the BiocManager package:

BiocManager::install(c("ballgown", "genefilter"))

However, to get the latest packages from Bioconductor you'll need R version 3.5 not the R version 3.4.4 you are using.

ADD COMMENTlink written 7 months ago by Lluís Revilla Sancho480
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 254 users visited in the last hour