I downloaded the latest version of biomaRt and tried to run:
m1 <- useMart("plants_mart", "osativa_eg_gene", host = "archive.plants.ensembl.org")
go <- getBM(attributes=c("go_accession", "tigr_locus", "entrezgene","go_namespace_1003"),mart=m1)
Since the "tigr_locus" attribute name changed or it's missing in the latest version of biomaRt I used host="archive.plants.ensembl.org".
I got this error.
Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, :
line 1 did not have 3 elements
Can you tell me how to fix it?
How to get the "tigr_locus" attribute in the latest version? any other name?
Thanks a lot.