Question: error importing bam file for MEDIPS analysis
gravatar for oussama.badad
9 months ago by
oussama.badad0 wrote:


i am tying to import my bam files for MEDIP-seq analysis.

my bam files are in "MEDIPS_BAMs" directory

i am using the following command :

> AKM-ANF_MeDIP = MEDIPS.createSet(file = "MEDIPS_BAMs/AKM-ANF.sorted.bam", BSgenome = BSgenome.Oeuropaea.IOGC.v1, extend = 300, shift = 0, uniq = TRUE, window_size = 100).

i get the following error message:

Error in as.environment(pos) :
  no item called "paste("package:", BSgenome, sep = "")" on the search list
In addition: Warning message:
In ls(paste("package:", BSgenome, sep = "")) :
  ‘paste("package:", BSgenome, sep = "")’ converted to character string

your help is very appreciated .


medips bamfile • 225 views
ADD COMMENTlink modified 7 months ago by Bioconductor Community ♦♦ 0 • written 9 months ago by oussama.badad0
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