I can't install the pasilla package
1
0
Entering edit mode
Aurora ▴ 20
@aurora-15104
Last seen 5.4 years ago

Hi,

I am trying to install the pasilla package by following the bioconductor website instructions :

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("pasilla", version = "3.8")

But I have the following answer :

Installing package into ‘/home/myname/R/x86_64-pc-linux-gnu-library/3.4’
(as ‘lib’ is unspecified)
Warning in install.packages :
  package ‘BiocManager’ is not available (for R version 3.4.4)

How can I install the bioManager package and so the pasilla package ?

Thank a lot

pasilla biocmanager • 2.1k views
ADD COMMENT
1
Entering edit mode
@james-w-macdonald-5106
Last seen 20 minutes ago
United States

You can do either

  1. Install the current version of R (R-3.5.2), then use install.packages to install BiocManager, and then the pasilla package (recommended)
  2. Stick with your current version of R, install BiocInstaller by doing source("https://www.bioconductor.org/biocLite.R") and then biocLite("pasilla"). This isn't really recommended, as we don't support old versions of R/Bioconductor, so I would do #1 if at all possible.
ADD COMMENT
0
Entering edit mode

Thanks a lot !

ADD REPLY

Login before adding your answer.

Traffic: 900 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6