How tximport summerize transcript-level abundance to gene-level
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lkianmehr • 0
@lkianmehr-16873
Last seen 2.8 years ago
Iran

Hello,

Excuse me, I have encounterd with one question about tximport. I have used tximport to import trancript-level abundance from Salmon to gene-level. now I want to choose some of significant genes for confirmation by RT-PCR. but I am not sure may I choose the gene or it's transcript. because each gene has number of transcript. whether tximport summerize all trasncript of one gene to gene-level or even one of its transcript?

tximport • 576 views
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@mikelove
Last seen 3 hours ago
United States

This is a choice for the user to make. You can do either one with the statistical testing tools. Take a look at the Soneson 2015 paper which is the citation for tximport.

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