Question: How tximport summerize transcript-level abundance to gene-level
0
gravatar for lkianmehr
5 months ago by
lkianmehr0
lkianmehr0 wrote:

Hello,

Excuse me, I have encounterd with one question about tximport. I have used tximport to import trancript-level abundance from Salmon to gene-level. now I want to choose some of significant genes for confirmation by RT-PCR. but I am not sure may I choose the gene or it's transcript. because each gene has number of transcript. whether tximport summerize all trasncript of one gene to gene-level or even one of its transcript?

tximport • 157 views
ADD COMMENTlink modified 5 months ago by Michael Love23k • written 5 months ago by lkianmehr0
Answer: How tximport summerize transcript-level abundance to gene-level
2
gravatar for Michael Love
5 months ago by
Michael Love23k
United States
Michael Love23k wrote:

This is a choice for the user to make. You can do either one with the statistical testing tools. Take a look at the Soneson 2015 paper which is the citation for tximport.

ADD COMMENTlink written 5 months ago by Michael Love23k
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